Index

C

col_effects (pronoms.normalizers.MedianPolishNormalizer attribute)

converged (pronoms.normalizers.MedianPolishNormalizer attribute)

D

DirectLFQNormalizer (class in pronoms.normalizers)

do_between_sample_norm (pronoms.normalizers.DirectLFQNormalizer attribute)

E

epsilon (pronoms.normalizers.MedianPolishNormalizer attribute) (pronoms.normalizers.SPLMNormalizer attribute)

G

grand_mean_log_scaling_factor (pronoms.normalizers.SPLMNormalizer attribute)

I

iterations_run (pronoms.normalizers.MedianPolishNormalizer attribute)

L

L1Normalizer (class in pronoms.normalizers) log_scaling_factors (pronoms.normalizers.SPLMNormalizer attribute)

log_transform (pronoms.normalizers.MADNormalizer attribute) (pronoms.normalizers.MedianPolishNormalizer attribute)

M

MADNormalizer (class in pronoms.normalizers) max_iterations (pronoms.normalizers.MedianPolishNormalizer attribute) mean_of_medians (pronoms.normalizers.MedianNormalizer attribute)

mean_of_scaling_factors (pronoms.normalizers.L1Normalizer attribute) MedianNormalizer (class in pronoms.normalizers) MedianPolishNormalizer (class in pronoms.normalizers) min_nonan (pronoms.normalizers.DirectLFQNormalizer attribute)

N

n_quad_ions (pronoms.normalizers.DirectLFQNormalizer attribute) n_quad_samples (pronoms.normalizers.DirectLFQNormalizer attribute) normalize() (pronoms.normalizers.DirectLFQNormalizer method) (pronoms.normalizers.L1Normalizer method) (pronoms.normalizers.MADNormalizer method) (pronoms.normalizers.MedianNormalizer method) (pronoms.normalizers.MedianPolishNormalizer method) (pronoms.normalizers.QuantileNormalizer method) (pronoms.normalizers.RankNormalizer method) (pronoms.normalizers.SPLMNormalizer method) (pronoms.normalizers.VSNNormalizer method)

normalize_by_n (pronoms.normalizers.RankNormalizer attribute) num_cores (pronoms.normalizers.DirectLFQNormalizer attribute) num_stable_proteins (pronoms.normalizers.SPLMNormalizer attribute)

O

overall_median (pronoms.normalizers.MedianPolishNormalizer attribute)

P

plot_comparison() (pronoms.normalizers.DirectLFQNormalizer method) (pronoms.normalizers.L1Normalizer method) (pronoms.normalizers.MADNormalizer method) (pronoms.normalizers.MedianNormalizer method) (pronoms.normalizers.MedianPolishNormalizer method) (pronoms.normalizers.QuantileNormalizer method) (pronoms.normalizers.RankNormalizer method) (pronoms.normalizers.SPLMNormalizer method) (pronoms.normalizers.VSNNormalizer method)

Q

QuantileNormalizer (class in pronoms.normalizers)

R

RankNormalizer (class in pronoms.normalizers) ranks (pronoms.normalizers.RankNormalizer attribute) reference_distribution (pronoms.normalizers.QuantileNormalizer attribute)

residuals (pronoms.normalizers.MedianPolishNormalizer attribute) row_effects (pronoms.normalizers.MedianPolishNormalizer attribute) row_mads (pronoms.normalizers.MADNormalizer attribute) row_medians (pronoms.normalizers.MADNormalizer attribute)

S

scale_to_sigma (pronoms.normalizers.MADNormalizer attribute) scaling_factors (pronoms.normalizers.L1Normalizer attribute) (pronoms.normalizers.MedianNormalizer attribute)

SPLMNormalizer (class in pronoms.normalizers) stable_protein_indices (pronoms.normalizers.SPLMNormalizer attribute)

T

tolerance (pronoms.normalizers.MedianPolishNormalizer attribute)

V

vsn_params (pronoms.normalizers.VSNNormalizer attribute)

VSNNormalizer (class in pronoms.normalizers)